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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ATAC-seq
49
total RNA-seq
14
ChIP-seq
8
single cell RNA-seq
6
snATAC-seq
5
STARR-seq
2
Capture-C
1
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
57
Transcription
14
DNA binding
6
DNA accessibility
1
3D chromatin structure
1
DNA sequencing
Target of assay
12
control
2
broad histone mark
2
histone
2
histone modification
Date released
135
August, 2017
127
February, 2021
125
November, 2017
122
May, 2022
98
February, 2023
87
August, 2021
84
October, 2019
67
May, 2021
56
September, 2020
47
September, 2023
40
May, 2024
31
June, 2019
29
October, 2018
25
May, 2020
23
May, 2019
19
April, 2020
17
December, 2017
17
November, 2018
16
January, 2021
16
July, 2019
15
April, 2019
10
November, 2020
9
October, 2017
8
February, 2018
5
December, 2018
5
January, 2018
5
March, 2023
4
January, 2019
4
July, 2018
4
September, 2017
3
May, 2023
2
March, 2020
2
November, 2019
1
August, 2018
1
August, 2022
1
December, 2019
1
October, 2022
1
September, 2018
Available data
tsv
57
txt
9
bam
9
tagAlign
1
bed narrowPeak
1
bedpe bed3+
1
bigWig
1
vcf
Organism
86
Homo sapiens
Biosample type
65
tissue
12
cell line
9
in vitro differentiated cells
1
primary cell
Organ
65
kidney
8
liver
3
epithelium
3
pancreas
1
adipose tissue
1
connective tissue
Project
87
AMP
Genome assembly (visualization)
hg19
16
GRCh38
Lab
63
Katalin Susztak, Upenn
13
AMP-T2D consortium
11
Bing Ren, UCSD
Audit category:
3
inconsistent ontology term
assay_title!
ATAC-seq
assembly!
hg19
files.file_type!
tsv
organ_slims!
pericardium
BIOSAMPLE
ASSAY
87 results
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Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
49
8
6
islet of Langerhans
1
subcutaneous adipose tissue
1
cell line
HepG2
4
2
1
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
9
primary cell
hepatocyte
1
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