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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ATAC-seq
23
ChIP-seq
6
single cell RNA-seq
2
WGBS
1
DNase-seq
1
pCHi-C
Assay category
23
DNA binding
6
Transcription
2
DNA methylation
1
DNA accessibility
Target of assay
20
control
3
histone
3
histone modification
2
broad histone mark
1
narrow histone mark
Date released
11
May, 2019
10
October, 2019
6
August, 2021
February, 2020
2
February, 2021
2
July, 2019
1
June, 2019
1
March, 2020
Available data
26
bam
7
tsv
2
bigWig
2
tagAlign
1
bed bed3+
1
bed bedMethyl
1
bed broadPeak
1
bed narrowPeak
1
bigBed bedMethyl
1
bigBed broadPeak
1
bigBed narrowPeak
Organism
33
Homo sapiens
Biosample type
25
tissue
6
primary cell
2
cell line
Organ
206
pancreas
167
heart
165
liver
150
kidney
148
epithelium
107
brain
93
connective tissue
89
bone element
63
adipose tissue
33
blood vessel
33
vasculature
25
eye
23
limb
21
musculature of body
14
blood
14
bodily fluid
11
artery
11
nerve
11
spleen
8
embryo
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
small intestine
1
stomach
1
urinary bladder
Project
33
AMP
Genome assembly (visualization)
hg19
141
GRCh38
Lab
33
AMP-T2D consortium
assay_title!
ATAC-seq
assembly!
hg19
month_released!
April, 2020
February, 2020
BIOSAMPLE
ASSAY
33 results
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ChIP-seq
single cell RNA-seq
WGBS
DNase-seq
pCHi-C
tissue
aorta
2
4
2
1
tibial artery
5
thoracic aorta
4
ascending aorta
3
coronary artery
2
+ See 1 more…
primary cell
endothelial cell of umbilical vein
5
kidney capillary endothelial cell
1
cell line
smooth muscle cell of the coronary artery
2
See all biosamples
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