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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
98
ChIP-seq
31
total RNA-seq
10
DNase-seq
6
pCHi-C
ATAC-seq
Assay category
98
DNA binding
31
Transcription
10
DNA accessibility
Target of assay
72
histone
72
histone modification
45
broad histone mark
27
narrow histone mark
26
control
Date released
76
November, 2017
27
October, 2019
13
February, 2020
11
June, 2019
9
October, 2017
4
February, 2023
3
May, 2019
2
March, 2020
Available data
87
bam
75
tagAlign
62
bed narrowPeak
62
bigBed narrowPeak
61
bigWig
19
tsv
10
bed bed3+
10
bed broadPeak
10
bigBed broadPeak
3
fastq
Organism
145
Homo sapiens
Biosample type
144
tissue
1
primary cell
Organ
207
pancreas
170
heart
166
liver
150
kidney
148
epithelium
119
brain
95
connective tissue
89
bone element
65
adipose tissue
36
blood vessel
36
vasculature
26
eye
26
limb
23
musculature of body
20
lung
14
blood
14
bodily fluid
13
artery
12
nerve
11
spleen
8
embryo
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
145
AMP
Genome assembly (visualization)
221
GRCh38
hg19
Lab
145
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
1
missing controlled_by
assay_title!
ATAC-seq
assembly!
hg19
BIOSAMPLE
ASSAY
145 results
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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
pCHi-C
tissue
layer of hippocampus
22
islet of Langerhans
2
14
4
caudate nucleus
14
1
1
substantia nigra
14
1
cingulate gyrus
12
+ See 29 more…
primary cell
retinal pigment epithelial cell
1
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