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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
433
ChIP-seq
159
total RNA-seq
ATAC-seq
5
DNase-seq
3
Hi-C
3
small RNA-seq
2
RRBS
1
WGBS
1
pCHi-C
Assay category
433
DNA binding
162
Transcription
5
DNA accessibility
3
3D chromatin structure
3
DNA methylation
Target of assay
333
transcription factor
83
histone modification
82
histone
81
recombinant protein
56
RNA binding protein
52
narrow histone mark
30
broad histone mark
23
chromatin remodeller
14
control
2
other context
2
other post-translational modification
Date released
268
November, 2017
170
May, 2020
52
November, 2018
50
December, 2017
19
August, 2017
18
August, 2021
9
July, 2019
6
October, 2019
5
December, 2019
5
January, 2019
2
June, 2019
2
March, 2020
1
February, 2021
Available data
601
bigWig
587
bam
418
bed narrowPeak
394
fastq
357
bigBed narrowPeak
162
tsv
63
bed broadPeak
63
bigBed broadPeak
42
tagAlign
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
hdf5
Organism
607
Homo sapiens
Biosample type
334
cell line
247
tissue
14
in vitro differentiated cells
12
primary cell
Organ
607
liver
593
pancreas
567
connective tissue
422
adipose tissue
279
epithelium
225
brain
225
heart
156
vasculature
150
blood vessel
136
kidney
89
limb
83
artery
73
musculature of body
58
bone element
54
blood
54
bodily fluid
30
nerve
29
embryo
18
ureter
17
vein
15
spleen
7
eye
2
pericardium
1
pituitary gland
Project
607
AMP
Genome assembly (visualization)
602
hg19
528
GRCh38
Lab
592
AMP-T2D consortium
15
Bing Ren, UCSD
Audit category:
27
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
assay_title!
ATAC-seq
month_released!
January, 2021
BIOSAMPLE
ASSAY
607 results
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ChIP-seq
total RNA-seq
DNase-seq
Hi-C
small RNA-seq
RRBS
WGBS
pCHi-C
cell line
HepG2
326
5
1
1
1
tissue
liver
83
147
2
1
1
1
right lobe of liver
7
2
1
2
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
3
5
1
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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