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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
896
total RNA-seq
563
ChIP-seq
177
DNase-seq
ATAC-seq
16
WGBS
16
small RNA-seq
6
single cell RNA-seq
Assay category
918
Transcription
563
DNA binding
177
DNA accessibility
16
DNA methylation
Target of assay
485
histone modification
484
histone
245
narrow histone mark
239
broad histone mark
75
transcription factor
26
RNA binding protein
3
control
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
444
February, 2021
163
June, 2019
162
May, 2020
159
October, 2019
134
August, 2017
116
July, 2018
92
May, 2019
64
April, 2019
57
November, 2017
55
July, 2019
45
October, 2018
40
May, 2024
38
May, 2021
36
December, 2017
22
November, 2018
19
November, 2019
7
March, 2020
6
April, 2018
6
January, 2019
3
December, 2018
3
October, 2017
2
September, 2017
1
May, 2023
Available data
1667
bigWig
1631
bam
917
tsv
735
bed narrowPeak
550
bigBed narrowPeak
245
fastq
190
bed bed3+
188
bed broadPeak
176
bigBed broadPeak
113
tagAlign
16
bed bedMethyl
16
bigBed bedMethyl
1
tagAlign bed3+
Organism
1668
Homo sapiens
Biosample type
1674
tissue
445
cell line
263
primary cell
243
in vitro differentiated cells
3
stem cell
Organ
465
connective tissue
407
adipose tissue
348
pancreas
237
liver
198
brain
152
heart
90
kidney
88
limb
67
blood vessel
67
vasculature
58
bone element
42
musculature of body
30
nerve
25
artery
18
ureter
15
spleen
3
eye
1
pituitary gland
Project
1674
AMP
T1D
Genome assembly (visualization)
1674
GRCh38
1606
hg19
Lab
1634
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
27
inconsistent control
3
inconsistent ontology term
Audit category:
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
ATAC-seq
audit.NOT_COMPLIANT.category!
missing controlled_by
award.project!
T1D
BIOSAMPLE
ASSAY
1674 results
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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
WGBS
small RNA-seq
single cell RNA-seq
tissue
adipose tissue
382
1
2
islet of Langerhans
260
13
1
6
liver
147
75
2
1
bone tissue
58
left cardiac atrium
40
1
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