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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
195
ChIP-seq
148
total RNA-seq
100
single cell RNA-seq
ATAC-seq
23
DNase-seq
2
small RNA-seq
1
Hi-C
Assay category
250
Transcription
195
DNA binding
23
DNA accessibility
1
3D chromatin structure
Target of assay
187
histone
187
histone modification
96
narrow histone mark
91
broad histone mark
8
RNA binding protein
8
transcription factor
3
control
1
chromatin remodeller
Date released
136
May, 2021
58
September, 2018
48
July, 2018
45
June, 2019
45
May, 2020
43
April, 2018
39
August, 2017
16
July, 2019
8
October, 2019
5
December, 2019
5
November, 2020
4
May, 2019
4
November, 2017
3
August, 2018
3
August, 2021
3
June, 2018
2
October, 2018
1
February, 2021
1
March, 2023
Available data
468
bam
468
bigWig
250
tsv
206
bed narrowPeak
195
fastq
98
tagAlign
67
bigBed narrowPeak
39
bed broadPeak
39
bigBed broadPeak
26
bed bed3+
1
hic
Organism
469
Homo sapiens
Biosample type
1634
tissue
469
primary cell
398
cell line
248
in vitro differentiated cells
3
stem cell
Organ
192
epithelium
160
pancreas
30
connective tissue
28
kidney
22
vasculature
blood vessel
14
brain
12
vein
11
musculature of body
10
heart
10
liver
3
eye
2
adipose tissue
2
artery
1
pericardium
Project
288
AMP
180
T1D
1
ITG
Genome assembly (visualization)
519
hg19
469
GRCh38
Lab
288
AMP-T2D consortium
180
Kyle Gaulton, UCSD
1
ITG
Audit category:
34
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
ATAC-seq
organ_slims!
blood vessel
skeleton
BIOSAMPLE
ASSAY
469 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
DNase-seq
small RNA-seq
Hi-C
primary cell
monocyte
84
53
pancreatic alpha cell
7
10
12
pancreatic beta cell
7
10
12
pancreatic ductal cell
13
4
10
pancreatic acinar cell
8
4
12
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