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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
892
total RNA-seq
545
ChIP-seq
171
DNase-seq
ATAC-seq
16
WGBS
16
small RNA-seq
6
single cell RNA-seq
Assay category
914
Transcription
545
DNA binding
171
DNA accessibility
16
DNA methylation
Target of assay
450
histone modification
449
histone
237
narrow histone mark
212
broad histone mark
92
transcription factor
26
RNA binding protein
3
control
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
444
February, 2021
162
May, 2020
161
June, 2019
156
August, 2017
116
July, 2018
109
October, 2019
89
May, 2019
64
April, 2019
57
November, 2017
55
July, 2019
45
October, 2018
40
May, 2024
38
May, 2021
36
December, 2017
22
November, 2018
19
November, 2019
9
March, 2020
6
April, 2018
6
January, 2019
6
October, 2017
3
December, 2018
2
September, 2017
1
May, 2023
Available data
1639
bigWig
1603
bam
913
tsv
690
bed narrowPeak
502
bigBed narrowPeak
270
fastq
198
bed bed3+
184
bed broadPeak
170
bigBed broadPeak
116
tagAlign
16
bed bedMethyl
16
bigBed bedMethyl
1
tagAlign bed3+
Organism
1640
Homo sapiens
Biosample type
1646
tissue
485
primary cell
398
cell line
248
in vitro differentiated cells
3
stem cell
Organ
477
connective tissue
419
adipose tissue
360
pancreas
237
liver
201
brain
152
heart
90
kidney
88
limb
67
blood vessel
67
vasculature
58
bone element
42
musculature of body
nerve
artery
18
ureter
15
spleen
3
eye
1
pituitary gland
Project
1644
AMP
2
T1D
Genome assembly (visualization)
1646
GRCh38
1578
hg19
Lab
1606
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
27
inconsistent control
3
inconsistent ontology term
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
ATAC-seq
organ_slims!
artery
nerve
BIOSAMPLE
ASSAY
1646 results
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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
WGBS
small RNA-seq
single cell RNA-seq
tissue
adipose tissue
382
1
2
islet of Langerhans
260
25
1
6
liver
147
75
2
1
bone tissue
58
left cardiac atrium
40
1
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