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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
101
ChIP-seq
36
DNase-seq
ATAC-seq
4
total RNA-seq
1
WGBS
Assay category
101
DNA binding
36
DNA accessibility
4
Transcription
1
DNA methylation
Target of assay
51
transcription factor
48
histone
48
histone modification
34
broad histone mark
14
narrow histone mark
10
RNA binding protein
10
chromatin remodeller
Date released
50
October, 2019
32
June, 2019
27
December, 2018
15
January, 2019
12
November, 2018
5
May, 2019
1
July, 2019
Available data
142
bam
142
bigWig
137
bed narrowPeak
137
bigBed narrowPeak
54
fastq
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
4
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
142
Homo sapiens
Biosample type
88
tissue
54
cell line
Organ
576
pancreas
561
connective tissue
528
liver
421
adipose tissue
260
epithelium
219
heart
215
brain
145
vasculature
141
blood vessel
130
kidney
88
limb
83
artery
58
bone element
54
blood
54
bodily fluid
53
musculature of body
30
nerve
29
embryo
18
ureter
15
spleen
12
vein
6
eye
1
pericardium
pituitary gland
Project
142
AMP
Genome assembly (visualization)
142
GRCh38
142
hg19
Lab
142
AMP-T2D consortium
Audit category:
1
inconsistent control
1
inconsistent ontology term
assay_title!
ATAC-seq
organ_slims!
pituitary gland
BIOSAMPLE
ASSAY
142 results
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ChIP-seq
DNase-seq
total RNA-seq
WGBS
tissue
tibial nerve
24
2
4
tibial artery
18
2
muscle of leg
5
13
1
muscle of arm
17
forelimb muscle
1
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cell line
GM12878
54
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