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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
171
ChIP-seq
32
DNase-seq
5
total RNA-seq
4
small RNA-seq
3
single cell RNA-seq
ATAC-seq
Assay category
171
DNA binding
32
DNA accessibility
12
Transcription
Target of assay
168
histone
168
histone modification
107
narrow histone mark
61
broad histone mark
3
RNA binding protein
3
control
3
transcription factor
Date released
78
October, 2019
63
November, 2017
30
June, 2019
25
May, 2019
11
July, 2019
6
October, 2017
2
November, 2018
Available data
213
bam
212
bigWig
201
bed narrowPeak
126
bigBed narrowPeak
82
tagAlign
46
bed broadPeak
38
bigBed broadPeak
32
bed bed3+
14
fastq
12
tsv
1
tagAlign bed3+
Organism
215
Homo sapiens
Biosample type
201
tissue
14
primary cell
Organ
576
pancreas
561
connective tissue
528
liver
421
adipose tissue
260
epithelium
219
heart
215
brain
145
vasculature
141
blood vessel
130
kidney
88
limb
artery
58
bone element
54
blood
54
bodily fluid
53
musculature of body
nerve
29
embryo
18
ureter
15
spleen
12
vein
6
eye
1
pericardium
1
pituitary gland
Project
215
AMP
Genome assembly (visualization)
215
GRCh38
163
hg19
Lab
215
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
3
missing controlled_by
assay_title!
ATAC-seq
organ_slims!
artery
nerve
BIOSAMPLE
ASSAY
215 results
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ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
single cell RNA-seq
tissue
brain
11
14
1
layer of hippocampus
17
temporal lobe
13
1
1
angular gyrus
14
caudate nucleus
12
1
+ See 72 more…
primary cell
astrocyte of the cerebellum
2
1
brain microvascular endothelial cell
2
1
choroid plexus epithelial cell
2
1
cerebellar granule cell
2
Purkinje cell
1
+ See 2 more…
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