Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1277total RNA-seq
  • 1266ChIP-seq
  • ATAC-seq
  • 207DNase-seq
  • 106single cell RNA-seq
  • 18small RNA-seq
  • 17WGBS
  • 2Hi-C
Assay category
  • 1401Transcription
  • 1266DNA binding
  • 207DNA accessibility
  • 17DNA methylation
  • 23D chromatin structure
Target of assay
  • 804histone modification
  • 803histone
  • 448transcription factor
  • 410narrow histone mark
  • 392broad histone mark
  • 100RNA binding protein
  • 88recombinant protein
  • 34chromatin remodeller
  • 12control
  • 5other context
  • 5other post-translational modification
Date released
  • 550February, 2021
  • 280November, 2017
  • 263May, 2021
  • 244August, 2017
  • 210June, 2019
  • 207May, 2020
  • 201October, 2019
  • 164July, 2018
  • 96May, 2019
  • 79November, 2018
  • 77December, 2017
  • 73July, 2019
  • 64April, 2019
  • 58September, 2018
  • 49April, 2018
  • 47October, 2018
  • 40May, 2024
  • 31August, 2021
  • 31February, 2018
  • 31November, 2019
  • 30December, 2018
  • 26January, 2019
  • 16March, 2020
  • 6October, 2017
  • 5December, 2019
  • 5November, 2020
  • 3August, 2018
  • 3June, 2018
  • 2September, 2017
  • 1March, 2023
  • 1May, 2023
Available data
  • 2879bigWig
  • 2848bam
  • 1424bed narrowPeak
  • 1400tsv
  • 974bigBed narrowPeak
  • 909fastq
  • 281bed broadPeak
  • 267bigBed broadPeak
  • 258bed bed3+
  • 246tagAlign
  • 17bed bedMethyl
  • 17bigBed bedMethyl
  • 1hdf5
  • 1hic
  • 1tagAlign bed3+
Organism
  • 2887Homo sapiens
Biosample type
  • 1701tissue
  • 487primary cell
  • 454cell line
  • 248in vitro differentiated cells
  • 3stem cell
Organ
  • 576pancreas
  • 561connective tissue
  • 528liver
  • 421adipose tissue
  • 260epithelium
  • 219heart
  • 215brain
  • 145vasculature
  • 141blood vessel
  • 130kidney
  • 88limb
  • 83artery
  • 58bone element
  • 54blood
  • 54bodily fluid
  • 53musculature of body
  • 30nerve
  • 29embryo
  • 18ureter
  • 15spleen
  • 12vein
  • 6eye
  • 1pericardium
  • 1pituitary gland
Project
  • 2706AMP
  • 186T1D
  • 1ITG
Genome assembly (visualization)
  • 2952hg19
  • 2893GRCh38
  • 5hg18
Lab
  • 2672AMP-T2D consortium
  • 180Kyle Gaulton, UCSD
  • 40Patrick T. Ellinor, Broad
  • 1ITG
Audit category:
  • 185inconsistent ontology term
  • 28inconsistent control
Audit category:
  • 79missing controlled_by
Audit category:
  • 52inconsistent control read length
  • 7inconsistent control run_type
  • 4inconsistent assembly
assay_title!
  • ATAC-seq
BIOSAMPLE
ASSAY

2893 results

search-icontable-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
single cell RNA-seq
small RNA-seq
WGBS
Hi-C
tissue
adipose tissue38212
islet of Langerhans2602516
liver1477521
bone tissue58
left cardiac atrium401
primary cell
monocyte5384
pancreatic alpha cell10712
pancreatic beta cell10712
pancreatic ductal cell41310
pancreatic acinar cell4812
cell line
HepG252611
smooth muscle cell of the coronary artery524
GM1287854
EndoC_BH13313
H1-hESC8
in vitro differentiated cells
cardiomyocytes593
adipocyte4481
neural progenitor cell713
cardiac precursors (cardiac muscle cell)19
pancreatic endoderm413
stem cell
hESC3
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego