Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
123
ChIP-seq
22
DNase-seq
5
total RNA-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
ATAC-seq
1
FAIRE-seq
Assay category
123
DNA binding
23
DNA accessibility
12
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
117
histone
117
histone modification
92
narrow histone mark
25
broad histone mark
6
control
3
RNA binding protein
3
transcription factor
Date released
78
October, 2019
25
May, 2019
20
June, 2019
17
July, 2019
15
November, 2017
6
October, 2017
2
November, 2018
Available data
159
bigWig
155
bam
141
bed narrowPeak
65
bigBed narrowPeak
43
tagAlign
37
bed broadPeak
28
bigBed broadPeak
25
bed bed3+
17
fastq
12
tsv
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
tagAlign bed3+
Organism
163
Homo sapiens
Biosample type
142
tissue
21
primary cell
Organ
602
liver
585
pancreas
564
connective tissue
420
adipose tissue
273
epithelium
176
heart
163
brain
154
vasculature
148
blood vessel
129
kidney
88
limb
83
artery
72
musculature of body
58
bone element
54
blood
54
bodily fluid
30
nerve
29
embryo
18
ureter
17
vein
13
spleen
7
eye
2
pericardium
1
pituitary gland
Project
163
AMP
Genome assembly (visualization)
215
GRCh38
163
hg19
Lab
163
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
3
missing controlled_by
assay_title!
ATAC-seq
audit.WARNING.category!
inconsistent assembly
organ_slims!
large intestine
BIOSAMPLE
ASSAY
163 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
FAIRE-seq
tissue
brain
11
14
1
1
temporal lobe
13
1
1
angular gyrus
14
frontal cortex
2
1
1
1
superior frontal gyrus
4
+ See 66 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
See all biosamples
Download