Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
Hi-C
2
pCHi-C
Assay category
15
3D chromatin structure
Date released
11
March, 2020
3
October, 2019
2
November, 2019
1
August, 2021
Available data
2359
bigWig
2331
bam
1165
bed narrowPeak
1148
tsv
851
bigBed narrowPeak
750
fastq
254
bed broadPeak
219
bigBed broadPeak
216
bed bed3+
139
tagAlign
17
bedpe bed3+
17
hic
9
bed bedMethyl
9
bigBed bedMethyl
3
tar
2
ibed
1
bedpe
1
hdf5
1
tagAlign bed3+
1
txt
Organism
17
Homo sapiens
Biosample type
9
tissue
6
in vitro differentiated cells
primary cell
2
cell line
Organ
3
heart
3
pancreas
2
liver
2
musculature of body
1
blood vessel
1
epithelium
1
vasculature
Project
17
AMP
Genome assembly (visualization)
17
hg19
Lab
16
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
7
inconsistent ontology term
assay_title!
ATAC-seq
biosample_type!
primary cell
target.investigated_as!
other context
BIOSAMPLE
ASSAY
17 results
search-icon
table-tab-icon
Clear Filters
Hi-C
pCHi-C
tissue
psoas muscle
2
aorta
1
heart
1
heart left ventricle
1
heart right ventricle
1
+ See 3 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
1
lymphocyte of B lineage (iPSC)
1
1
cardiac precursors (cardiac muscle cell)
1
cell line
EndoC_BH1
1
HepG2
1
See all biosamples
Download