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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
394
ChIP-seq
100
total RNA-seq
ATAC-seq
2
Hi-C
1
pCHi-C
Assay category
394
DNA binding
100
Transcription
2
3D chromatin structure
Target of assay
345
transcription factor
78
recombinant protein
62
RNA binding protein
31
histone
31
histone modification
30
chromatin remodeller
16
narrow histone mark
15
broad histone mark
13
control
2
other context
2
other post-translational modification
Date released
266
November, 2017
84
February, 2021
54
November, 2018
27
December, 2018
23
August, 2021
20
January, 2019
October, 2019
13
November, 2019
5
March, 2020
5
May, 2021
Available data
494
bigWig
480
bam
375
bed narrowPeak
367
fastq
343
bigBed narrowPeak
100
tsv
58
bed broadPeak
58
bigBed broadPeak
17
tagAlign
3
tar
2
bedpe bed3+
2
hic
1
bed bed3+
Organism
497
Homo sapiens
Biosample type
1473
tissue
520
primary cell
497
cell line
251
in vitro differentiated cells
3
stem cell
Organ
329
liver
56
artery
56
blood vessel
56
heart
56
vasculature
54
blood
54
bodily fluid
47
epithelium
47
pancreas
8
embryo
Project
493
AMP
4
T1D
Genome assembly (visualization)
497
hg19
434
GRCh38
Lab
482
AMP-T2D consortium
15
Bing Ren, UCSD
Audit category:
47
inconsistent ontology term
1
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
assay_title!
ATAC-seq
month_released!
January, 2021
October, 2019
BIOSAMPLE
ASSAY
497 results
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Clear Filters
ChIP-seq
total RNA-seq
Hi-C
pCHi-C
cell line
HepG2
322
5
1
1
smooth muscle cell of the coronary artery
4
52
GM12878
54
EndoC_BH1
13
33
1
H1-hESC
8
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