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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
107
ChIP-seq
Assay category
107
DNA binding
Target of assay
218
histone
218
histone modification
111
broad histone mark
107
narrow histone mark
10
RNA binding protein
10
control
10
transcription factor
1
chromatin remodeller
Date released
50
May, 2021
22
August, 2017
15
September, 2018
11
June, 2019
3
November, 2017
3
October, 2019
2
August, 2021
1
May, 2019
Available data
107
bigWig
99
bed narrowPeak
97
bam
47
tagAlign
40
fastq
21
bigBed narrowPeak
8
bed broadPeak
8
bigBed broadPeak
2
bed bed3+
Organism
107
Homo sapiens
Biosample type
239
tissue
107
primary cell
40
in vitro differentiated cells
19
cell line
1
stem cell
Organ
34
epithelium
31
pancreas
7
vasculature
6
blood vessel
5
kidney
vein
4
connective tissue
4
musculature of body
3
brain
2
heart
2
liver
1
eye
Project
67
AMP
40
T1D
Genome assembly (visualization)
107
hg19
97
GRCh38
Lab
57
AMP-T2D consortium
50
Kyle Gaulton, UCSD
Audit category:
9
inconsistent ontology term
Audit category:
23
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
assay_title!
ATAC-seq
organ_slims!
vein
BIOSAMPLE
ASSAY
107 results
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ChIP-seq
primary cell
monocyte
40
pancreatic endocrine cell
12
CD8-positive, alpha-beta T cell
10
pancreatic ductal cell
7
skeletal muscle myoblast
6
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