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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
147
ChIP-seq
8
total RNA-seq
4
DNase-seq
ATAC-seq
1
Hi-C
Assay category
147
DNA binding
8
Transcription
4
DNA accessibility
1
3D chromatin structure
Target of assay
147
histone
147
histone modification
108
narrow histone mark
39
broad histone mark
Date released
444
February, 2021
175
August, 2017
170
May, 2020
160
October, 2019
147
June, 2019
116
July, 2018
93
May, 2019
65
April, 2019
49
July, 2019
45
October, 2018
38
May, 2021
36
December, 2017
20
November, 2019
17
November, 2018
16
March, 2020
6
April, 2018
6
January, 2019
6
November, 2017
6
October, 2017
3
December, 2018
2
September, 2017
1
August, 2021
1
March, 2019
1
May, 2022
1
May, 2023
Available data
157
bam
157
bigWig
149
bed narrowPeak
46
bigBed narrowPeak
40
tagAlign
8
tsv
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
1
bedpe bed3+
1
hic
1
tagAlign bed3+
Organism
160
Homo sapiens
Biosample type
160
tissue
24
primary cell
20
cell line
4
in vitro differentiated cells
Organ
78
brain
50
limb
30
nerve
20
artery
20
blood vessel
20
vasculature
8
heart
6
liver
2
kidney
1
pituitary gland
Project
160
AMP
Genome assembly (visualization)
160
hg19
159
GRCh38
Lab
160
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
assay_title!
ATAC-seq
files.file_type!
bed bedMethyl
BIOSAMPLE
ASSAY
160 results
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ChIP-seq
total RNA-seq
DNase-seq
Hi-C
tissue
tibial nerve
24
4
2
tibial artery
18
2
heart
5
2
1
brain
5
1
liver
5
1
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