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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
395
total RNA-seq
40
ChIP-seq
ATAC-seq
6
DNase-seq
2
small RNA-seq
Assay category
397
Transcription
40
DNA binding
6
DNA accessibility
Target of assay
22
histone
22
histone modification
18
transcription factor
14
broad histone mark
8
narrow histone mark
6
RNA binding protein
Date released
386
February, 2021
20
October, 2019
14
August, 2017
10
July, 2019
5
October, 2018
3
June, 2019
3
May, 2019
1
May, 2023
1
November, 2018
Available data
442
bigWig
441
bam
396
tsv
34
bed narrowPeak
33
bigBed narrowPeak
19
fastq
10
bed bed3+
7
bed broadPeak
6
bigBed broadPeak
1
tagAlign
Organism
443
Homo sapiens
Biosample type
443
tissue
56
cell line
4
primary cell
Organ
476
connective tissue
418
adipose tissue
367
pancreas
247
liver
142
brain
109
heart
92
kidney
88
limb
67
blood vessel
67
vasculature
60
musculature of body
58
bone element
30
nerve
25
artery
18
ureter
13
spleen
3
eye
1
pericardium
1
pituitary gland
Project
443
AMP
Genome assembly (visualization)
444
GRCh38
443
hg19
Lab
443
AMP-T2D consortium
Audit category:
12
missing controlled_by
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
443 results
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total RNA-seq
ChIP-seq
DNase-seq
small RNA-seq
tissue
adipose tissue
382
1
tibial artery
18
2
white adipose tissue
12
omental fat pad
4
3
2
1
subcutaneous adipose tissue
6
2
1
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