Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
81
ChIP-seq
5
total RNA-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
ATAC-seq
Assay category
81
DNA binding
12
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
78
histone
78
histone modification
75
narrow histone mark
6
control
3
broad histone mark
Date released
78
October, 2019
16
July, 2019
4
November, 2017
Available data
159
bigWig
155
bam
141
bed narrowPeak
bigBed narrowPeak
43
tagAlign
37
bed broadPeak
28
bigBed broadPeak
25
bed bed3+
17
fastq
12
tsv
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
tagAlign bed3+
Organism
98
Homo sapiens
Biosample type
88
tissue
10
primary cell
Organ
541
connective tissue
520
pancreas
412
adipose tissue
249
liver
225
epithelium
98
brain
85
heart
72
vasculature
70
blood vessel
58
artery
58
bone element
32
kidney
29
embryo
25
musculature of body
4
limb
4
nerve
4
vein
2
pericardium
1
eye
1
pituitary gland
Project
98
AMP
Genome assembly (visualization)
98
hg19
89
GRCh38
Lab
98
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
assay_title!
ATAC-seq
files.file_type!
bigBed narrowPeak
organ_slims!
blood
BIOSAMPLE
ASSAY
98 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
tissue
brain
5
1
1
superior frontal gyrus
4
angular gyrus
2
anterior cingulate gyrus
2
central medial thalamic nucleus
2
+ See 64 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
Purkinje cell
1
+ See 1 more…
See all biosamples
Download