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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
43
total RNA-seq
18
small RNA-seq
14
RRBS
ATAC-seq
4
Hi-C
3
single cell RNA-seq
2
FAIRE-seq
Assay category
64
Transcription
14
DNA methylation
4
3D chromatin structure
2
DNA accessibility
Target of assay
3
control
Date released
552
February, 2021
281
November, 2017
271
August, 2017
208
October, 2019
187
June, 2019
170
May, 2020
164
July, 2018
128
May, 2021
97
May, 2019
84
July, 2019
77
December, 2017
71
November, 2018
65
April, 2019
58
September, 2018
49
April, 2018
48
August, 2021
47
October, 2018
33
November, 2019
31
February, 2018
30
December, 2018
28
March, 2020
26
January, 2019
6
October, 2017
5
December, 2019
5
November, 2020
3
August, 2018
3
June, 2018
3
October, 2022
2
September, 2017
1
March, 2019
1
May, 2022
1
May, 2023
Available data
70
bigWig
66
bam
64
tsv
14
bed bedMethyl
14
bigBed bedMethyl
4
bed bed3+
4
hdf5
2
bed narrowPeak
2
bigBed narrowPeak
Organism
84
Homo sapiens
Biosample type
54
tissue
30
primary cell
Organ
18
connective tissue
17
brain
13
epithelium
13
heart
12
adipose tissue
11
kidney
9
liver
8
vasculature
7
blood vessel
6
pancreas
5
musculature of body
2
artery
pericardium
1
eye
Project
84
AMP
Genome assembly (visualization)
84
hg19
72
GRCh38
Lab
84
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
assay_title!
ATAC-seq
lab.title!
Kyle Gaulton, UCSD
organ_slims!
pericardium
BIOSAMPLE
ASSAY
84 results
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total RNA-seq
small RNA-seq
RRBS
Hi-C
single cell RNA-seq
FAIRE-seq
tissue
omental fat pad
4
1
subcutaneous adipose tissue
4
1
body of pancreas
2
2
right lobe of liver
2
2
frontal cortex
1
1
1
+ See 18 more…
primary cell
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
mesenchymal stem cell of adipose
1
1
renal cortical epithelial cell
1
1
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