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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
396
total RNA-seq
58
ChIP-seq
ATAC-seq
3
small RNA-seq
2
DNase-seq
Assay category
399
Transcription
58
DNA binding
2
DNA accessibility
Target of assay
54
transcription factor
9
RNA binding protein
4
chromatin remodeller
2
histone
2
histone modification
2
narrow histone mark
Date released
386
February, 2021
27
December, 2018
January, 2019
14
August, 2017
13
November, 2018
12
July, 2019
5
October, 2018
1
June, 2019
1
May, 2023
Available data
458
bigWig
457
bam
398
tsv
58
fastq
48
bed narrowPeak
47
bigBed narrowPeak
6
bed bed3+
3
bed broadPeak
2
bigBed broadPeak
1
tagAlign
Organism
459
Homo sapiens
Biosample type
418
tissue
39
cell line
2
primary cell
Organ
597
liver
587
pancreas
564
connective tissue
420
adipose tissue
273
epithelium
176
heart
163
brain
154
vasculature
148
blood vessel
129
kidney
88
limb
83
artery
72
musculature of body
58
bone element
39
blood
39
bodily fluid
30
nerve
29
embryo
18
ureter
17
vein
7
eye
7
spleen
2
pericardium
1
pituitary gland
Project
459
AMP
Genome assembly (visualization)
460
GRCh38
459
hg19
Lab
459
AMP-T2D consortium
Audit category:
1
inconsistent control
Audit category:
12
missing controlled_by
assay_title!
ATAC-seq
month_released!
January, 2019
BIOSAMPLE
ASSAY
459 results
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total RNA-seq
ChIP-seq
small RNA-seq
DNase-seq
tissue
adipose tissue
382
1
white adipose tissue
12
omental fat pad
4
3
1
2
subcutaneous adipose tissue
6
2
1
visceral abdominal adipose tissue
3
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cell line
GM12878
39
primary cell
mesenchymal stem cell of adipose
1
1
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