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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1305ChIP-seq
  • 1279total RNA-seq
  • ATAC-seq
  • 186DNase-seq
  • 106single cell RNA-seq
  • 27Hi-C
  • 19RRBS
  • 18small RNA-seq
  • 5FAIRE-seq
  • 4pCHi-C
  • 2Capture-C
  • 1snATAC-seq
Assay category
  • 1403Transcription
  • 1305DNA binding
  • 192DNA accessibility
  • 273D chromatin structure
  • 19DNA methylation
Target of assay
  • 784histone modification
  • 783histone
  • 487transcription factor
  • 411narrow histone mark
  • 371broad histone mark
  • 100RNA binding protein
  • 85recombinant protein
  • 36chromatin remodeller
  • 32control
  • 5other context
  • 5other post-translational modification
Date released
  • 552February, 2021
  • 298May, 2021
  • 281November, 2017
  • 271August, 2017
  • 215May, 2020
  • 208October, 2019
  • 187June, 2019
  • 164July, 2018
  • 97May, 2019
  • 86July, 2019
  • 77December, 2017
  • 71November, 2018
  • 65April, 2019
  • 58September, 2018
  • 49April, 2018
  • 48August, 2021
  • 47October, 2018
  • 33November, 2019
  • 31February, 2018
  • 30December, 2018
  • 28March, 2020
  • 26January, 2019
  • 6October, 2017
  • 5December, 2019
  • 5November, 2020
  • 3August, 2018
  • 3June, 2018
  • 3October, 2022
  • 2September, 2017
  • 1March, 2019
  • 1May, 2022
  • 1May, 2023
Available data
  • 2892bigWig
  • 2826bam
  • 1419bed narrowPeak
  • 1400tsv
  • 959fastq
  • 936bigBed narrowPeak
  • 297bed broadPeak
  • 262bigBed broadPeak
  • 246bed bed3+
  • 238tagAlign
  • 22hic
  • 21bedpe bed3+
  • 19bed bedMethyl
  • 19bigBed bedMethyl
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1txt
Organism
  • 2946Homo sapiens
Biosample type
  • 1633tissue
  • 544primary cell
  • 517cell line
  • 255in vitro differentiated cells
  • 3stem cell
Organ
  • 602liver
  • 587pancreas
  • 564connective tissue
  • 420adipose tissue
  • 273epithelium
  • 176heart
  • 163brain
  • 154vasculature
  • 148blood vessel
  • 129kidney
  • 88limb
  • 83artery
  • 72musculature of body
  • 58bone element
  • 54blood
  • 54bodily fluid
  • 30nerve
  • 29embryo
  • 18ureter
  • 17vein
  • 13spleen
  • 7eye
  • 2pericardium
  • 1pituitary gland
Project
  • 2763AMP
  • 186T1D
  • 3HPAP
Genome assembly (visualization)
  • 2952hg19
  • 2893GRCh38
  • 5hg18
Lab
  • 2715AMP-T2D consortium
  • 215Kyle Gaulton, UCSD
  • 16Bing Ren, UCSD
  • 3Klaus Kaestner, Upenn
  • 2Struan F.A. Grant, CHOP
  • 1Katalin Susztak, Upenn
Audit category:
  • 194inconsistent ontology term
  • 28inconsistent control
  • 5audit script error
Audit category:
  • 86missing controlled_by
Audit category:
  • 56inconsistent control read length
  • 9inconsistent control run_type
  • 4inconsistent assembly
assay_title!
  • ATAC-seq
BIOSAMPLE
ASSAY

2952 results

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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
single cell RNA-seq
Hi-C
RRBS
small RNA-seq
FAIRE-seq
pCHi-C
Capture-C
snATAC-seq
tissue
adipose tissue1382
islet of Langerhans3126016211
liver831472111
bone tissue58
heart left ventricle293311
primary cell
monocyte8453
CD8-positive, alpha-beta T cell334
pancreatic alpha cell710121
pancreatic beta cell710121
pancreatic ductal cell13410
cell line
HepG2322511
smooth muscle cell of the coronary artery452
GM1287854
EndoC_BH113331
H1-hESC8
in vitro differentiated cells
cardiomyocytes359
adipocyte48411
cardiac precursors (cardiac muscle cell)191
neural progenitor cell127
pancreatic endoderm134
stem cell
hESC3
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