Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
146
total RNA-seq
141
single cell RNA-seq
ATAC-seq
49
snATAC-seq
47
WGBS
3
CRISPR genome editing followed by DNA sequencing
3
ChIP-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
291
Transcription
49
DNA accessibility
47
DNA methylation
3
DNA binding
Target of assay
3
histone
3
histone modification
3
narrow histone mark
Date released
May, 2021
95
May, 2022
88
February, 2023
56
September, 2020
47
September, 2023
45
May, 2020
19
April, 2020
18
February, 2021
16
January, 2021
7
March, 2020
4
March, 2023
Available data
132
fastq
114
zippedFastqFolder
53
tsv
50
bam
50
bigWig
3
bed narrowPeak
hic
Organism
390
Homo sapiens
Biosample type
298
primary cell
85
tissue
10
cell line
2
stem cell
Organ
122
pancreas
103
epithelium
47
kidney
19
lung
8
blood
8
bodily fluid
Project
AMP
245
HPAP
80
T1D
47
KPMP
19
LungMap
4
community
Genome assembly (visualization)
50
GRCh38
50
hg19
Lab
245
Klaus Kaestner, Upenn
73
Kyle Gaulton, UCSD
47
KPMP
19
Xin Sun, UCSD
7
AMP-T2D consortium
4
Anna Gloyn, Oxford
Audit category:
audit script error
7
inconsistent ontology term
assay_title!
ATAC-seq
audit.ERROR.category!
audit script error
award.project!
AMP
files.file_type!
hic
month_released!
May, 2021
BIOSAMPLE
ASSAY
395 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
single cell RNA-seq
snATAC-seq
WGBS
CRISPR genome editing followed by DNA sequencing
ChIP-seq
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
Langerhans cell
85
21
pancreatic alpha cell
42
31
exocrine cell
39
pancreatic beta cell
11
16
peripheral blood mononuclear cell
8
+ See 25 more…
tissue
kidney
47
lung
9
10
islet of Langerhans
7
6
2
pancreas
4
cell line
EndoC_BH1
2
3
1
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
See all biosamples
Download