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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
150
total RNA-seq
100
single cell RNA-seq
ATAC-seq
6
WGBS
2
small RNA-seq
Assay category
252
Transcription
6
DNA methylation
Target of assay
3
control
Date released
52
May, 2021
48
July, 2018
45
May, 2020
43
April, 2018
26
September, 2018
18
July, 2019
7
February, 2021
5
December, 2019
4
November, 2020
3
August, 2018
3
June, 2018
2
October, 2018
2
October, 2019
Available data
535
bigWig
525
bam
350
fastq
258
tsv
256
bed narrowPeak
114
zippedFastqFolder
100
tagAlign
87
bigBed narrowPeak
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
2
csv
2
hic
1
bedpe bed3+
1
tar
Organism
258
Homo sapiens
Biosample type
1068
tissue
258
primary cell
129
in vitro differentiated cells
118
cell line
4
stem cell
Organ
116
epithelium
108
pancreas
15
connective tissue
6
kidney
5
liver
4
heart
3
brain
2
adipose tissue
2
artery
2
blood vessel
2
musculature of body
2
vasculature
1
pericardium
Project
156
AMP
96
T1D
6
HPAP
Genome assembly (visualization)
252
GRCh38
252
hg19
Lab
156
AMP-T2D consortium
96
Kyle Gaulton, UCSD
6
Klaus Kaestner, Upenn
Audit category:
11
inconsistent ontology term
assay_title!
ATAC-seq
audit.ERROR.category!
audit script error
files.file_type!
bed bed3
BIOSAMPLE
ASSAY
258 results
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total RNA-seq
single cell RNA-seq
WGBS
small RNA-seq
primary cell
monocyte
53
pancreatic alpha cell
10
12
6
pancreatic beta cell
10
12
pancreatic acinar cell
4
12
pancreatic ductal cell
4
10
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