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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1031
total RNA-seq
907
ChIP-seq
ATAC-seq
178
DNase-seq
175
single cell RNA-seq
85
RNA microarray
27
WGBS
26
snATAC-seq
24
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1222
Transcription
907
DNA binding
208
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
628
histone modification
627
histone
324
narrow histone mark
303
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
532
February, 2021
282
August, 2017
226
October, 2019
193
May, 2020
165
August, 2021
163
June, 2019
120
July, 2018
115
May, 2019
82
November, 2017
80
April, 2019
74
October, 2018
71
July, 2019
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
37
March, 2020
27
May, 2022
26
November, 2018
25
February, 2020
20
November, 2019
19
April, 2020
16
February, 2023
15
October, 2017
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
4
May, 2023
4
November, 2020
1
December, 2019
1
March, 2019
Available data
1843
bam
1729
bigWig
1067
tsv
776
bed narrowPeak
558
bigBed narrowPeak
348
fastq
238
tagAlign
211
bed broadPeak
204
bed bed3+
176
bigBed broadPeak
151
txt
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
1
bedpe
1
csv
1
tagAlign bed3+
Organism
2498
Homo sapiens
Biosample type
2507
tissue
857
primary cell
633
cell line
350
in vitro differentiated cells
10
stem cell
Organ
541
connective tissue
482
adipose tissue
442
pancreas
340
liver
274
heart
261
brain
217
kidney
146
bone element
114
limb
95
blood vessel
95
vasculature
80
musculature of body
42
nerve
36
artery
28
eye
24
spleen
20
lung
18
ureter
5
gonad
5
ovary
4
skeleton
2
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
small intestine
1
spinal cord
stomach
1
urinary bladder
Project
2421
AMP
47
KPMP
20
T1D
19
LungMap
Genome assembly (visualization)
1701
GRCh38
1632
hg19
Lab
2284
AMP-T2D consortium
67
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
23
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
Audit category:
89
inconsistent ontology term
27
inconsistent control
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
ATAC-seq
audit.ERROR.category!
audit script error
organ_slims!
stomach
organ_slims!!
stomach
BIOSAMPLE
ASSAY
2507 results
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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
single cell RNA-seq
RNA microarray
WGBS
snATAC-seq
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
292
71
1
6
6
4
3
1
1
4
adipose tissue
382
2
3
1
liver
167
145
2
1
3
1
1
1
1
kidney
49
27
13
59
6
1
1
1
bone element
84
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