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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
27
ChIP-seq
4
total RNA-seq
2
small RNA-seq
ATAC-seq
1
WGBS
Assay category
33
DNA accessibility
27
DNA binding
6
Transcription
1
DNA methylation
Target of assay
27
histone
27
histone modification
16
broad histone mark
11
narrow histone mark
Date released
41
June, 2019
13
August, 2017
6
May, 2019
5
July, 2019
2
March, 2020
Available data
67
bigWig
60
bed narrowPeak
57
bam
47
bigBed narrowPeak
46
bed broadPeak
33
bed bed3+
33
bigBed broadPeak
15
tagAlign
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
Organism
67
Homo sapiens
Biosample type
56
tissue
11
primary cell
Organ
601
liver
582
pancreas
561
connective tissue
421
adipose tissue
267
epithelium
220
brain
220
heart
152
vasculature
147
blood vessel
131
kidney
89
limb
83
artery
67
musculature of body
58
bone element
54
blood
54
bodily fluid
30
nerve
29
embryo
18
ureter
15
spleen
15
vein
6
eye
pericardium
1
pituitary gland
Project
67
AMP
Genome assembly (visualization)
66
hg19
53
GRCh38
Lab
67
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
assay_title!
ATAC-seq
audit.ERROR.category!
audit script error
organ_slims!
pericardium
BIOSAMPLE
ASSAY
67 results
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Clear Filters
DNase-seq
ChIP-seq
total RNA-seq
small RNA-seq
WGBS
tissue
muscle of leg
13
6
1
muscle of arm
17
skeletal muscle tissue
13
1
1
psoas muscle
2
forelimb muscle
1
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primary cell
skeletal muscle satellite cell
7
1
1
skeletal muscle cell
1
1
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