Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
59
total RNA-seq
8
single cell RNA-seq
ATAC-seq
1
MPRA
Assay category
67
Transcription
Date released
84
February, 2021
57
August, 2021
6
May, 2022
4
February, 2023
1
October, 2022
Available data
3217
bam
3033
bigWig
1577
tsv
1539
bed narrowPeak
1270
fastq
1015
bigBed narrowPeak
398
tagAlign
320
bed broadPeak
285
bigBed broadPeak
268
bed bed3+
152
txt
114
zippedFastqFolder
36
bed bedMethyl
36
bigBed bedMethyl
bedpe bed3+
19
hic
5
hdf5
4
tar
3
csv
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
151
Homo sapiens
Biosample type
151
tissue
1
cell line
Organ
88
bone element
57
kidney
6
pancreas
4
skeleton
Project
152
AMP
Lab
89
AMP-T2D consortium
57
Katalin Susztak, Upenn
6
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
audit script error
assay_title!
ATAC-seq
audit.ERROR.category!
audit script error
files.file_type!
bed bed3
bedpe bed3+
BIOSAMPLE
ASSAY
152 results
search-icon
table-tab-icon
Clear Filters
RNA microarray
total RNA-seq
single cell RNA-seq
MPRA
tissue
bone element
84
kidney
49
8
islet of Langerhans
6
acetabular part of hip bone
1
ilium
1
+ See 2 more…
cell line
MIN6
1
See all biosamples
Download