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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
33
DNase-seq
6
Hi-C
6
total RNA-seq
5
RRBS
2
small RNA-seq
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
Assay category
39
DNA binding
33
DNA accessibility
9
Transcription
6
3D chromatin structure
6
DNA methylation
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
43
June, 2019
26
August, 2017
10
July, 2019
7
May, 2019
5
March, 2020
2
February, 2020
1
May, 2022
Available data
67
bigWig
60
bed narrowPeak
57
bam
47
bigBed narrowPeak
46
bed broadPeak
33
bed bed3+
33
bigBed broadPeak
15
tagAlign
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
Organism
94
Homo sapiens
Biosample type
80
tissue
14
primary cell
Organ
775
pancreas
762
liver
658
connective tissue
485
adipose tissue
383
epithelium
338
heart
242
kidney
197
brain
147
bone element
144
vasculature
138
blood vessel
94
musculature of body
71
artery
68
blood
68
bodily fluid
47
limb
37
embryo
24
spleen
20
lung
18
ureter
13
eye
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
94
AMP
Genome assembly (visualization)
71
hg19
53
GRCh38
Lab
94
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
audit script error
assay_title!
ATAC-seq
audit.ERROR.category!
audit script error
month_released!
October, 2019
organ_slims!
esophagus
BIOSAMPLE
ASSAY
94 results
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ChIP-seq
DNase-seq
Hi-C
total RNA-seq
RRBS
small RNA-seq
WGBS
pCHi-C
single cell RNA-seq
tissue
skeletal muscle tissue
22
1
4
1
1
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
4
1
psoas muscle
2
2
1
+ See 3 more…
primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
1
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