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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
33
DNase-seq
10
total RNA-seq
6
Hi-C
ATAC-seq
5
RRBS
2
small RNA-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
39
DNA binding
34
DNA accessibility
13
Transcription
6
3D chromatin structure
6
DNA methylation
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
43
June, 2019
26
August, 2017
10
July, 2019
7
May, 2019
5
March, 2020
4
February, 2023
2
February, 2020
2
May, 2022
Available data
67
bigWig
60
bed narrowPeak
57
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
9
tsv
5
txt
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
Organism
99
Homo sapiens
Biosample type
85
tissue
14
primary cell
Organ
762
pancreas
739
liver
389
epithelium
288
heart
282
brain
271
kidney
209
connective tissue
132
vasculature
126
blood vessel
114
limb
99
adipose tissue
95
musculature of body
67
blood
67
bodily fluid
42
nerve
38
artery
37
embryo
33
eye
24
spleen
22
vein
20
lung
18
ureter
5
bone element
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
99
AMP
Genome assembly (visualization)
72
hg19
53
GRCh38
Lab
99
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
assay_title!
ATAC-seq
audit.ERROR.category!
inconsistent control
month_released!
February, 2021
BIOSAMPLE
ASSAY
99 results
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ChIP-seq
DNase-seq
total RNA-seq
Hi-C
RRBS
small RNA-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
1
4
1
1
1
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
1
4
psoas muscle
2
2
1
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primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
1
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