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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
545
ChIP-seq
189
total RNA-seq
ATAC-seq
7
DNase-seq
7
WGBS
4
Hi-C
4
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
545
DNA binding
193
Transcription
9
DNA methylation
7
DNA accessibility
4
3D chromatin structure
1
DNA sequencing
Target of assay
317
transcription factor
116
control
109
histone modification
108
histone
82
recombinant protein
62
narrow histone mark
58
RNA binding protein
46
broad histone mark
21
chromatin remodeller
5
other context
5
other post-translational modification
Date released
315
November, 2017
194
May, 2020
62
November, 2018
53
August, 2017
36
December, 2017
35
August, 2021
20
May, 2022
12
January, 2019
10
July, 2019
8
December, 2018
6
October, 2019
5
December, 2019
4
March, 2020
2
February, 2021
2
June, 2019
1
February, 2020
Available data
674
bam
589
bigWig
460
fastq
404
bed narrowPeak
343
bigBed narrowPeak
175
tsv
86
tagAlign
64
bed broadPeak
64
bigBed broadPeak
14
bed bed3+
5
bed bedMethyl
5
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
csv
1
hdf5
1
vcf
Organism
765
Homo sapiens
Biosample type
400
cell line
337
tissue
15
in vitro differentiated cells
13
primary cell
Organ
794
pancreas
741
liver
659
connective tissue
485
adipose tissue
421
epithelium
346
heart
282
brain
279
kidney
190
vasculature
184
blood vessel
147
bone element
114
limb
96
artery
95
musculature of body
67
blood
67
bodily fluid
42
nerve
embryo
33
eye
24
spleen
22
vein
20
lung
18
ureter
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
765
AMP
Genome assembly (visualization)
588
hg19
516
GRCh38
Lab
714
AMP-T2D consortium
31
Bing Ren, UCSD
20
Karen Mohlke, UNC
Audit category:
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
assay_title!
ATAC-seq
audit.ERROR.category!
inconsistent control
organ_slims!
embryo
BIOSAMPLE
ASSAY
765 results
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ChIP-seq
total RNA-seq
DNase-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
378
14
1
2
2
2
1
tissue
liver
118
167
2
3
1
1
1
1
1
spleen
20
1
2
1
right lobe of liver
10
3
2
1
2
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
5
1
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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