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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
89
total RNA-seq
ATAC-seq
4
Hi-C
3
ChIP-seq
3
pCHi-C
2
single cell RNA-seq
Assay category
91
Transcription
4
3D chromatin structure
3
DNA binding
Target of assay
3
transcription factor
Date released
68
May, 2021
18
February, 2021
7
March, 2020
4
October, 2019
December, 2017
2
December, 2019
2
February, 2023
Available data
90
bam
90
bigWig
90
tsv
6
bedpe bed3+
4
hic
3
bed narrowPeak
3
tagAlign
2
ibed
Organism
101
Homo sapiens
Biosample type
101
in vitro differentiated cells
90
tissue
65
cell line
37
primary cell
1
stem cell
Organ
2
connective tissue
2
embryo
1
epithelium
Project
101
AMP
Genome assembly (visualization)
96
hg19
90
GRCh38
Lab
101
AMP-T2D consortium
Audit category:
101
inconsistent ontology term
2
audit script error
assay_title!
ATAC-seq
month_released!
December, 2017
target.investigated_as!
control
BIOSAMPLE
ASSAY
101 results
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total RNA-seq
Hi-C
ChIP-seq
pCHi-C
single cell RNA-seq
in vitro differentiated cells
cardiomyocytes
59
3
cardiac precursors (cardiac muscle cell)
19
1
cardiomyocytes (cardiac muscle cell)
3
2
2
2
lymphocyte of B lineage (iPSC)
1
1
1
immature adipocyte
2
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