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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
162
ChIP-seq
154
total RNA-seq
ATAC-seq
117
single cell RNA-seq
56
snATAC-seq
17
pCHi-C
13
DNase-seq
4
RRBS
3
Hi-C
2
small RNA-seq
1
DNAme array
Assay category
273
Transcription
162
DNA binding
69
DNA accessibility
5
DNA methylation
3
3D chromatin structure
Target of assay
146
histone
146
histone modification
79
broad histone mark
67
narrow histone mark
14
control
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
193
May, 2021
54
May, 2022
47
May, 2020
41
February, 2021
40
September, 2020
39
February, 2023
35
June, 2019
18
July, 2019
16
August, 2017
15
July, 2018
10
April, 2018
8
January, 2021
5
November, 2020
3
November, 2017
2
June, 2018
1
March, 2023
1
November, 2018
1
September, 2018
Available data
311
bigWig
281
bam
160
bed narrowPeak
146
fastq
142
tsv
95
tagAlign
73
zippedFastqFolder
46
bigBed narrowPeak
26
bed broadPeak
26
bigBed broadPeak
16
bed bed3+
4
bed bedMethyl
4
bigBed bedMethyl
2
csv
2
hdf5
1
hic
Organism
529
Homo sapiens
Biosample type
2487
tissue
559
cell line
529
primary cell
322
in vitro differentiated cells
10
stem cell
Organ
epithelium
231
pancreas
37
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
musculature of body
13
heart
13
liver
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
204
T1D
172
HPAP
152
AMP
1
ITG
Genome assembly (visualization)
315
hg19
270
GRCh38
Lab
239
Kyle Gaulton, UCSD
172
Klaus Kaestner, Upenn
117
AMP-T2D consortium
1
ITG
Audit category:
33
inconsistent ontology term
27
audit script error
Audit category:
missing controlled_by
Audit category:
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
assay_title!
ATAC-seq
audit.NOT_COMPLIANT.category!
missing controlled_by
audit.WARNING.category!
inconsistent assembly
organ_slims!
epithelium
BIOSAMPLE
ASSAY
529 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
pCHi-C
DNase-seq
RRBS
Hi-C
small RNA-seq
DNAme array
primary cell
monocyte
85
54
1
1
Langerhans cell
85
48
exocrine cell
39
CD8-positive, alpha-beta T cell
33
4
1
skeletal muscle myoblast
13
1
2
1
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