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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
257
ChIP-seq
89
total RNA-seq
9
WGBS
6
RRBS
ATAC-seq
5
DNase-seq
1
FAIRE-seq
Assay category
257
DNA binding
89
Transcription
15
DNA methylation
6
DNA accessibility
Target of assay
183
histone modification
182
histone
104
broad histone mark
77
narrow histone mark
50
control
24
transcription factor
7
RNA binding protein
3
chromatin remodeller
Date released
559
February, 2021
396
November, 2017
367
August, 2017
365
May, 2021
292
October, 2019
241
May, 2020
218
June, 2019
186
August, 2021
168
July, 2018
120
May, 2019
102
July, 2019
93
December, 2017
85
November, 2018
80
April, 2019
76
October, 2018
60
March, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
35
November, 2019
30
January, 2019
27
September, 2018
25
February, 2020
22
February, 2023
21
May, 2022
19
April, 2020
16
January, 2021
15
November, 2020
11
October, 2017
10
December, 2019
6
September, 2017
5
January, 2018
5
March, 2023
4
August, 2018
4
May, 2023
3
June, 2018
1
August, 2022
1
March, 2019
Available data
243
fastq
238
bam
228
bigWig
136
bed narrowPeak
89
tsv
85
tagAlign
41
bed broadPeak
37
bigBed narrowPeak
19
bed bed3+
15
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
360
Homo sapiens
Biosample type
260
tissue
63
in vitro differentiated cells
44
primary cell
Organ
163
pancreas
107
connective tissue
53
liver
44
adipose tissue
26
epithelium
26
musculature of body
Project
367
AMP
Genome assembly (visualization)
232
hg19
205
GRCh38
Lab
367
AMP-T2D consortium
Audit category:
missing controlled_by
Audit category:
16
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
assay_title!
ATAC-seq
audit.NOT_COMPLIANT.category!
missing controlled_by
files.file_type!
txt
lab.title!
Klaus Kaestner, Upenn
BIOSAMPLE
ASSAY
367 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
RRBS
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
32
89
1
1
liver
48
3
1
subcutaneous abdominal adipose tissue
36
3
skeletal muscle tissue
22
4
pancreas
14
+ See 2 more…
in vitro differentiated cells
adipocyte
62
1
primary cell
skeletal muscle myoblast
15
1
2
pancreatic alpha cell
13
pancreatic beta cell
13
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