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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ATAC-seq
52
total RNA-seq
41
WGBS
35
single cell RNA-seq
22
snATAC-seq
Assay category
87
Transcription
41
DNA methylation
22
DNA accessibility
Date released
693
February, 2021
394
November, 2017
367
August, 2017
365
May, 2021
292
October, 2019
243
August, 2021
241
May, 2020
218
June, 2019
168
July, 2018
123
May, 2022
120
May, 2019
102
February, 2023
102
July, 2019
93
December, 2017
82
November, 2018
80
April, 2019
76
October, 2018
60
March, 2020
56
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
35
November, 2019
30
January, 2019
27
September, 2018
25
February, 2020
19
April, 2020
16
January, 2021
15
November, 2020
11
October, 2017
10
December, 2019
6
September, 2017
5
January, 2018
5
March, 2023
4
August, 2018
4
May, 2023
4
October, 2022
3
June, 2018
1
August, 2022
1
March, 2019
Available data
95
zippedFastqFolder
33
fastq
32
bam
26
bigWig
26
tsv
7
txt
1
bed bed3+
1
csv
Organism
150
Homo sapiens
Biosample type
122
primary cell
28
tissue
Organ
73
pancreas
67
epithelium
20
liver
2
musculature of body
Project
95
HPAP
55
AMP
Genome assembly (visualization)
27
hg19
26
GRCh38
Lab
95
Klaus Kaestner, Upenn
29
AMP-T2D consortium
20
Karen Mohlke, UNC
6
Kyle Gaulton, UCSD
Audit category:
1
audit script error
Audit category:
missing controlled_by
assay_title!
ATAC-seq
audit.NOT_COMPLIANT.category!
missing controlled_by
target.investigated_as!
other context
BIOSAMPLE
ASSAY
150 results
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Clear Filters
total RNA-seq
WGBS
single cell RNA-seq
snATAC-seq
primary cell
Langerhans cell
33
21
pancreatic alpha cell
10
25
pancreatic beta cell
10
16
pancreatic ductal cell
4
pancreatic acinar cell
2
+ See 1 more…
tissue
liver
20
islet of Langerhans
6
skeletal muscle tissue
1
1
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