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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
92
total RNA-seq
85
single cell RNA-seq
ATAC-seq
48
snATAC-seq
47
WGBS
3
Hi-C
Assay category
177
Transcription
48
DNA accessibility
47
DNA methylation
3
3D chromatin structure
Date released
95
May, 2022
76
February, 2023
56
September, 2020
45
February, 2021
3
October, 2022
Available data
159
fastq
114
zippedFastqFolder
6
tsv
3
bedpe bed3+
3
cool
3
hic
Organism
275
Homo sapiens
Biosample type
275
primary cell
Organ
103
epithelium
103
pancreas
Project
3196
AMP
275
HPAP
224
T1D
47
KPMP
19
LungMap
2
community
1
ITG
Genome assembly (visualization)
3
hg19
Lab
275
Klaus Kaestner, Upenn
Audit category:
30
audit script error
assay_title!
ATAC-seq
audit.WARNING.category!
inconsistent assembly
inconsistent control run_type
biosample_type!
cell line
BIOSAMPLE
ASSAY
275 results
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total RNA-seq
single cell RNA-seq
snATAC-seq
WGBS
Hi-C
primary cell
Langerhans cell
85
48
pancreatic alpha cell
42
31
1
exocrine cell
39
pancreatic beta cell
11
16
1
pancreatic acinar cell
1
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