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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
ChIP-seq
9
DNase-seq
8
snATAC-seq
7
WGBS
1
FAIRE-seq
Assay category
70
DNA binding
18
DNA accessibility
7
DNA methylation
Target of assay
64
transcription factor
21
RNA binding protein
16
recombinant protein
7
chromatin remodeller
6
control
3
other context
3
other post-translational modification
Date released
646
February, 2021
397
November, 2017
349
August, 2017
259
October, 2019
239
August, 2021
194
May, 2020
172
May, 2021
163
June, 2019
120
July, 2018
115
May, 2019
94
December, 2017
87
November, 2018
80
April, 2019
74
October, 2018
71
July, 2019
59
March, 2020
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
35
November, 2019
30
January, 2019
28
May, 2022
26
February, 2023
25
February, 2020
19
April, 2020
15
October, 2017
10
November, 2020
8
January, 2021
6
April, 2018
6
September, 2017
5
December, 2019
5
January, 2018
4
March, 2023
4
May, 2023
1
August, 2018
1
August, 2022
1
March, 2019
1
October, 2022
Available data
87
bam
87
fastq
80
bigWig
73
bed narrowPeak
73
bigBed narrowPeak
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
Organism
95
Homo sapiens
Biosample type
61
cell line
34
tissue
primary cell
Organ
53
liver
15
blood
15
bodily fluid
15
pancreas
9
spleen
2
brain
1
adipose tissue
1
connective tissue
Project
87
AMP
8
T1D
Genome assembly (visualization)
79
GRCh38
71
hg19
Lab
87
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
assay_title!
ATAC-seq
audit.WARNING.category!
inconsistent assembly
biosample_type!
primary cell
BIOSAMPLE
ASSAY
95 results
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ChIP-seq
DNase-seq
snATAC-seq
WGBS
FAIRE-seq
cell line
HepG2
45
1
GM12878
15
tissue
spleen
6
1
2
pancreas
4
2
1
liver
4
2
body of pancreas
2
2
islet of Langerhans
4
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