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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
919
total RNA-seq
879
ChIP-seq
ATAC-seq
116
single cell RNA-seq
110
DNase-seq
27
WGBS
25
pCHi-C
22
snATAC-seq
15
Hi-C
15
small RNA-seq
10
RRBS
4
MeRIP-seq
3
FAIRE-seq
1
RNA microarray
Assay category
1050
Transcription
879
DNA binding
135
DNA accessibility
37
DNA methylation
15
3D chromatin structure
Target of assay
607
histone modification
606
histone
314
narrow histone mark
292
broad histone mark
181
control
93
transcription factor
27
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
387
February, 2021
281
August, 2017
222
October, 2019
193
May, 2020
120
July, 2018
115
May, 2019
101
August, 2021
95
June, 2019
82
November, 2017
74
October, 2018
67
July, 2019
57
April, 2019
48
December, 2017
40
May, 2021
40
May, 2024
38
March, 2020
28
May, 2022
26
November, 2018
25
February, 2020
20
November, 2019
19
April, 2020
15
October, 2017
12
February, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
4
November, 2020
1
August, 2022
1
March, 2019
1
May, 2023
Available data
1686
bam
1579
bigWig
1005
tsv
686
bed narrowPeak
470
bigBed narrowPeak
347
fastq
237
tagAlign
142
bed broadPeak
137
bed bed3+
108
bigBed broadPeak
24
bed bedMethyl
24
bigBed bedMethyl
10
bedpe bed3+
10
hic
7
txt
1
bedpe
1
csv
1
tagAlign bed3+
Organism
2138
Homo sapiens
Biosample type
2146
tissue
849
primary cell
613
cell line
352
in vitro differentiated cells
10
stem cell
Organ
541
connective tissue
482
adipose tissue
442
pancreas
340
liver
274
heart
261
brain
kidney
bone element
114
limb
95
blood vessel
95
vasculature
81
musculature of body
42
nerve
36
artery
28
eye
24
spleen
20
lung
18
ureter
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2107
AMP
20
T1D
19
LungMap
Genome assembly (visualization)
1552
GRCh38
1482
hg19
Lab
2037
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
23
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
Audit category:
27
inconsistent control
6
inconsistent ontology term
2
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
inconsistent assembly
assay_title!
ATAC-seq
audit.WARNING.category!
inconsistent assembly
organ_slims!
bone element
kidney
BIOSAMPLE
ASSAY
2146 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
DNase-seq
WGBS
pCHi-C
snATAC-seq
Hi-C
small RNA-seq
RRBS
MeRIP-seq
FAIRE-seq
RNA microarray
tissue
islet of Langerhans
292
71
6
1
4
7
3
1
4
1
adipose tissue
382
2
3
1
liver
167
145
1
2
3
1
1
1
1
heart left ventricle
3
35
18
3
4
1
1
1
left cardiac atrium
40
18
1
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