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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
54
ChIP-seq
ATAC-seq
5
DNase-seq
2
WGBS
2
single cell RNA-seq
1
pCHi-C
Assay category
58
Transcription
54
DNA binding
5
DNA accessibility
2
DNA methylation
Target of assay
26
histone
26
histone modification
18
broad histone mark
17
control
11
transcription factor
8
narrow histone mark
3
other context
3
other post-translational modification
1
RNA binding protein
Date released
58
February, 2021
25
October, 2019
9
November, 2018
7
December, 2018
7
January, 2019
5
May, 2019
2
August, 2021
2
February, 2020
2
July, 2019
2
June, 2019
1
March, 2020
Available data
115
bam
98
bigWig
59
tsv
42
bed narrowPeak
38
bigBed narrowPeak
23
fastq
6
tagAlign
5
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
Organism
120
Homo sapiens
Biosample type
60
tissue
58
cell line
2
primary cell
Organ
792
pancreas
768
liver
659
connective tissue
485
adipose tissue
421
epithelium
346
heart
282
brain
279
kidney
190
vasculature
184
blood vessel
147
bone element
114
limb
96
artery
95
musculature of body
68
blood
68
bodily fluid
42
nerve
37
embryo
33
eye
24
spleen
22
vein
20
lung
18
ureter
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
120
AMP
Genome assembly (visualization)
98
GRCh38
96
hg19
Lab
120
AMP-T2D consortium
assay_title!
ATAC-seq
audit.WARNING.category!
inconsistent assembly
BIOSAMPLE
ASSAY
120 results
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total RNA-seq
ChIP-seq
DNase-seq
WGBS
single cell RNA-seq
pCHi-C
tissue
tibial artery
1
23
2
spleen
20
1
2
1
coronary artery
1
5
2
pulmonary artery
2
cell line
smooth muscle cell of the coronary artery
52
6
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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