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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
507
ChIP-seq
160
total RNA-seq
6
DNase-seq
5
WGBS
ATAC-seq
3
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
1
single cell RNA-seq
Assay category
507
DNA binding
164
Transcription
7
DNA methylation
6
DNA accessibility
3
3D chromatin structure
Target of assay
312
transcription factor
104
control
88
histone modification
87
histone
81
recombinant protein
52
narrow histone mark
51
RNA binding protein
35
broad histone mark
12
chromatin remodeller
2
other context
2
other post-translational modification
Date released
294
November, 2017
194
May, 2020
63
December, 2017
52
August, 2017
48
November, 2018
10
July, 2019
6
October, 2019
5
December, 2019
5
January, 2019
4
August, 2021
3
March, 2020
2
February, 2021
2
June, 2019
1
December, 2018
1
February, 2020
Available data
651
bam
560
bigWig
437
fastq
379
bed narrowPeak
332
bigBed narrowPeak
165
tsv
75
tagAlign
50
bed broadPeak
50
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
1
bedpe bed3+
1
csv
1
hdf5
1
hic
Organism
690
Homo sapiens
Biosample type
343
cell line
319
tissue
15
in vitro differentiated cells
13
primary cell
Organ
690
liver
650
connective tissue
647
pancreas
485
adipose tissue
307
epithelium
306
heart
282
brain
190
vasculature
184
blood vessel
163
kidney
146
bone element
114
limb
96
artery
95
musculature of body
60
blood
60
bodily fluid
42
nerve
34
embryo
33
eye
24
spleen
22
vein
18
ureter
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
690
AMP
Genome assembly (visualization)
560
hg19
505
GRCh38
Lab
690
AMP-T2D consortium
31
Bing Ren, UCSD
20
Karen Mohlke, UNC
Audit category:
27
inconsistent control
Audit category:
8
missing controlled_by
Audit category:
inconsistent control read length
8
inconsistent control run_type
assay_title!
ATAC-seq
audit.WARNING.category!
inconsistent control read length
award.project!
community
BIOSAMPLE
ASSAY
690 results
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ChIP-seq
total RNA-seq
DNase-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
single cell RNA-seq
cell line
HepG2
334
5
1
1
2
tissue
liver
144
147
2
3
1
1
1
1
1
right lobe of liver
10
3
2
1
2
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
5
1
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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