Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
372
ChIP-seq
104
total RNA-seq
ATAC-seq
2
DNase-seq
1
Hi-C
1
WGBS
Assay category
372
DNA binding
104
Transcription
2
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
341
transcription factor
87
recombinant protein
57
RNA binding protein
26
histone
26
histone modification
19
chromatin remodeller
14
narrow histone mark
control
12
broad histone mark
2
other context
2
other post-translational modification
Date released
234
November, 2017
83
February, 2021
52
November, 2018
27
December, 2018
22
August, 2021
20
January, 2019
20
October, 2019
12
November, 2019
5
March, 2020
5
May, 2021
Available data
480
bigWig
470
bam
370
bed narrowPeak
339
fastq
331
bigBed narrowPeak
118
tsv
46
bed broadPeak
46
bigBed broadPeak
5
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
480
Homo sapiens
Biosample type
1723
tissue
520
primary cell
480
cell line
230
in vitro differentiated cells
1
stem cell
Organ
293
liver
56
artery
56
blood vessel
56
heart
56
vasculature
54
blood
54
bodily fluid
54
pancreas
48
epithelium
12
kidney
8
embryo
Project
476
AMP
4
T1D
Genome assembly (visualization)
475
hg19
432
GRCh38
Lab
466
AMP-T2D consortium
14
Bing Ren, UCSD
Audit category:
56
inconsistent ontology term
1
inconsistent control
Audit category:
7
missing controlled_by
Audit category:
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
assay_title!
ATAC-seq
audit.WARNING.category!
inconsistent control read length
target.investigated_as!
control
BIOSAMPLE
ASSAY
480 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
Hi-C
WGBS
cell line
HepG2
287
5
1
smooth muscle cell of the coronary artery
4
52
GM12878
54
EndoC_BH1
13
33
H1-hESC
8
+ See 7 more…
See all biosamples
Download