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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
92
total RNA-seq
85
single cell RNA-seq
ATAC-seq
48
snATAC-seq
47
WGBS
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
181
Transcription
48
DNA accessibility
47
DNA methylation
Date released
95
May, 2022
76
February, 2023
56
September, 2020
45
February, 2021
4
March, 2023
Available data
159
fastq
114
zippedFastqFolder
6
tsv
3
bedpe bed3+
3
cool
hic
Organism
272
Homo sapiens
Biosample type
272
primary cell
2
cell line
2
stem cell
Organ
100
epithelium
100
pancreas
Project
272
HPAP
4
community
Lab
272
Klaus Kaestner, Upenn
225
Kyle Gaulton, UCSD
47
KPMP
19
Xin Sun, UCSD
8
AMP-T2D consortium
4
Anna Gloyn, Oxford
Audit category:
27
audit script error
assay_title!
ATAC-seq
award.project!
AMP
files.file_type!
hic
BIOSAMPLE
ASSAY
276 results
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total RNA-seq
single cell RNA-seq
snATAC-seq
WGBS
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
Langerhans cell
85
48
pancreatic alpha cell
42
31
exocrine cell
39
pancreatic beta cell
11
16
cell line
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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