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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
ATAC-seq
74
total RNA-seq
39
ChIP-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
180
Transcription
39
DNA binding
6
DNA accessibility
3
3D chromatin structure
1
DNA sequencing
Target of assay
17
histone
17
histone modification
11
control
11
transcription factor
9
narrow histone mark
8
broad histone mark
1
RNA binding protein
Date released
646
February, 2021
397
November, 2017
350
August, 2017
260
October, 2019
239
August, 2021
194
May, 2020
172
May, 2021
163
June, 2019
120
July, 2018
115
May, 2019
94
December, 2017
87
November, 2018
80
April, 2019
74
October, 2018
71
July, 2019
58
March, 2020
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
35
November, 2019
30
January, 2019
28
May, 2022
26
February, 2023
25
February, 2020
19
April, 2020
15
October, 2017
10
November, 2020
8
January, 2021
6
April, 2018
6
September, 2017
5
December, 2019
5
January, 2018
4
March, 2023
4
May, 2023
1
August, 2018
1
August, 2022
1
March, 2019
1
October, 2022
Available data
123
tsv
57
txt
42
bigWig
35
bam
27
bed narrowPeak
20
tagAlign
2
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
238
Homo sapiens
Biosample type
165
tissue
44
cell line
30
in vitro differentiated cells
primary cell
Organ
92
heart
66
kidney
31
liver
8
embryo
6
blood vessel
6
vasculature
4
pancreas
3
connective tissue
2
artery
2
epithelium
1
adipose tissue
Project
239
AMP
Genome assembly (visualization)
45
hg19
28
GRCh38
Lab
137
AMP-T2D consortium
64
Katalin Susztak, Upenn
36
Bing Ren, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
assay_title!
ATAC-seq
award.project!
HPAP
biosample_type!
primary cell
organ_slims!
small intestine
BIOSAMPLE
ASSAY
239 results
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single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 11 more…
cell line
HepG2
9
18
2
1
1
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
7
21
adipocyte
1
osteoblast
1
See all biosamples
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