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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1031
total RNA-seq
859
ChIP-seq
ATAC-seq
178
DNase-seq
171
single cell RNA-seq
87
RNA microarray
27
WGBS
25
pCHi-C
18
snATAC-seq
16
small RNA-seq
11
RRBS
6
Hi-C
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1218
Transcription
859
DNA binding
200
DNA accessibility
38
DNA methylation
6
3D chromatin structure
Target of assay
623
histone modification
622
histone
322
narrow histone mark
300
broad histone mark
175
control
63
transcription factor
26
RNA binding protein
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
537
February, 2021
282
August, 2017
225
October, 2019
193
May, 2020
164
August, 2021
163
June, 2019
120
July, 2018
115
May, 2019
82
November, 2017
80
April, 2019
74
October, 2018
71
July, 2019
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
31
March, 2020
28
May, 2022
26
November, 2018
25
February, 2020
19
November, 2019
16
February, 2023
15
October, 2017
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
4
May, 2023
4
November, 2020
3
December, 2019
1
August, 2022
1
March, 2019
Available data
1795
bam
1693
bigWig
1075
tsv
740
bed narrowPeak
522
bigBed narrowPeak
300
fastq
238
tagAlign
211
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
bedpe bed3+
6
csv
1
bedpe
1
tagAlign bed3+
Organism
2432
Homo sapiens
Biosample type
2440
tissue
884
primary cell
631
cell line
302
in vitro differentiated cells
7
stem cell
Organ
541
connective tissue
482
adipose tissue
440
pancreas
291
liver
271
heart
261
brain
224
kidney
146
bone element
114
limb
94
blood vessel
94
vasculature
79
musculature of body
42
nerve
36
artery
28
eye
24
spleen
18
ureter
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
pericardium
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2373
AMP
47
KPMP
20
T1D
LungMap
Genome assembly (visualization)
1665
GRCh38
1588
hg19
Lab
2237
AMP-T2D consortium
67
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
23
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
Audit category:
90
inconsistent ontology term
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
ATAC-seq
award.project!
LungMap
files.file_type!
bedpe bed3+
month_released!
December, 2017
BIOSAMPLE
ASSAY
2440 results
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total RNA-seq
ChIP-seq
DNase-seq
single cell RNA-seq
RNA microarray
WGBS
pCHi-C
snATAC-seq
small RNA-seq
RRBS
Hi-C
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
adipose tissue
382
2
3
1
islet of Langerhans
292
71
1
6
4
7
1
1
1
4
liver
167
107
2
1
3
1
1
1
kidney
49
27
13
64
6
1
1
1
bone element
84
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