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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
36
ChIP-seq
ATAC-seq
3
WGBS
3
small RNA-seq
1
DNase-seq
1
RNA microarray
1
pCHi-C
Assay category
401
Transcription
36
DNA binding
3
DNA methylation
1
DNA accessibility
Target of assay
31
histone
31
histone modification
20
broad histone mark
11
narrow histone mark
5
control
Date released
386
February, 2021
39
August, 2017
12
July, 2019
2
February, 2020
1
August, 2021
1
June, 2019
1
March, 2020
1
May, 2023
Available data
439
bam
421
bigWig
401
tsv
fastq
9
bed narrowPeak
8
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
442
Homo sapiens
Biosample type
441
tissue
2
primary cell
Organ
560
connective tissue
443
adipose tissue
379
pancreas
346
heart
304
liver
279
kidney
262
brain
196
epithelium
184
vasculature
181
blood vessel
147
bone element
114
limb
96
artery
93
musculature of body
42
nerve
33
eye
22
vein
18
ureter
10
embryo
8
blood
8
bodily fluid
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
443
AMP
Genome assembly (visualization)
401
hg19
400
GRCh38
Lab
443
AMP-T2D consortium
assay_title!
ATAC-seq
award.project!
LungMap
files.file_type!
fastq
BIOSAMPLE
ASSAY
443 results
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total RNA-seq
ChIP-seq
WGBS
small RNA-seq
DNase-seq
RNA microarray
pCHi-C
tissue
adipose tissue
382
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
1
1
omental fat pad
5
1
1
visceral abdominal adipose tissue
3
primary cell
mesenchymal stem cell of adipose
1
1
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