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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
195
ChIP-seq
ATAC-seq
154
single cell RNA-seq
151
total RNA-seq
31
DNase-seq
27
snATAC-seq
10
Hi-C
10
RRBS
6
WGBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
1
pCHi-C
Assay category
307
Transcription
195
DNA binding
59
DNA accessibility
17
DNA methylation
10
3D chromatin structure
Target of assay
153
histone
153
histone modification
78
broad histone mark
75
narrow histone mark
35
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
May, 2022
76
February, 2023
59
September, 2018
56
August, 2017
56
September, 2020
55
June, 2019
48
July, 2018
47
February, 2021
43
April, 2018
42
May, 2021
32
October, 2019
31
July, 2019
9
November, 2017
5
December, 2019
5
May, 2019
5
November, 2020
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
May, 2020
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
377
fastq
355
bigWig
345
bam
172
bed narrowPeak
162
tsv
87
bigBed narrowPeak
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
19
zippedFastqFolder
16
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
tar
Organism
589
Homo sapiens
Biosample type
2469
tissue
624
cell line
589
primary cell
352
in vitro differentiated cells
10
stem cell
Organ
293
epithelium
234
pancreas
37
vasculature
36
connective tissue
36
kidney
31
blood vessel
22
vein
21
brain
14
musculature of body
13
heart
13
liver
5
eye
2
adipose tissue
2
artery
1
pericardium
Project
408
AMP
T1D
180
HPAP
1
ITG
Genome assembly (visualization)
364
hg19
307
GRCh38
Lab
373
AMP-T2D consortium
180
Klaus Kaestner, Upenn
35
Kyle Gaulton, UCSD
1
ITG
Audit category:
37
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
ATAC-seq
award.project!
T1D
month_released!
May, 2022
BIOSAMPLE
ASSAY
589 results
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ChIP-seq
single cell RNA-seq
total RNA-seq
DNase-seq
snATAC-seq
Hi-C
RRBS
WGBS
small RNA-seq
DNAme array
FAIRE-seq
pCHi-C
primary cell
pancreatic alpha cell
13
12
52
1
6
Langerhans cell
52
27
pancreatic beta cell
13
12
21
1
exocrine cell
39
CD8-positive, alpha-beta T cell
33
2
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