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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
904
ChIP-seq
580
total RNA-seq
ATAC-seq
178
DNase-seq
174
single cell RNA-seq
27
WGBS
24
pCHi-C
18
snATAC-seq
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
RNA microarray
Assay category
904
DNA binding
770
Transcription
200
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
625
histone modification
624
histone
321
narrow histone mark
303
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
February, 2021
282
August, 2017
225
October, 2019
193
May, 2020
165
August, 2021
163
June, 2019
120
July, 2018
115
May, 2019
82
November, 2017
80
April, 2019
74
October, 2018
71
July, 2019
48
December, 2017
47
September, 2023
40
May, 2024
39
May, 2021
34
March, 2020
28
May, 2022
26
November, 2018
25
February, 2020
20
November, 2019
19
April, 2020
15
October, 2017
9
February, 2023
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
4
May, 2023
4
November, 2020
3
December, 2019
1
August, 2022
1
March, 2019
Available data
1397
bam
1283
bigWig
774
bed narrowPeak
623
tsv
558
bigBed narrowPeak
348
fastq
238
tagAlign
211
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
68
txt
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
1
bedpe
tagAlign bed3+
Organism
1950
Homo sapiens
Biosample type
1959
tissue
637
primary cell
537
cell line
330
in vitro differentiated cells
10
stem cell
Organ
424
pancreas
339
liver
274
heart
260
brain
216
kidney
114
limb
97
connective tissue
96
adipose tissue
95
blood vessel
95
vasculature
81
musculature of body
42
nerve
36
artery
28
eye
24
spleen
20
lung
18
ureter
5
gonad
5
ovary
4
bone element
4
skeleton
3
epithelium
2
intestine
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
1893
AMP
47
KPMP
T1D
19
LungMap
Genome assembly (visualization)
1254
GRCh38
1186
hg19
Lab
1752
AMP-T2D consortium
67
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
7
Kyle Gaulton, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
Audit category:
27
inconsistent control
6
inconsistent ontology term
4
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
ATAC-seq
award.project!
T1D
files.file_type!
tagAlign bed3+
month_released!
February, 2021
BIOSAMPLE
ASSAY
1959 results
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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
single cell RNA-seq
WGBS
pCHi-C
snATAC-seq
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
RNA microarray
tissue
islet of Langerhans
69
285
1
6
4
1
3
1
1
4
liver
145
167
2
3
1
1
1
1
kidney
27
49
13
59
6
1
1
1
heart left ventricle
35
3
3
18
4
1
1
1
left cardiac atrium
40
1
18
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