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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
832
ChIP-seq
620
total RNA-seq
ATAC-seq
180
single cell RNA-seq
176
DNase-seq
86
RNA microarray
23
pCHi-C
21
WGBS
18
snATAC-seq
16
Hi-C
14
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
832
DNA binding
814
Transcription
198
DNA accessibility
32
DNA methylation
16
3D chromatin structure
Target of assay
594
histone modification
593
histone
310
narrow histone mark
283
broad histone mark
163
control
77
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
226
August, 2017
226
October, 2019
193
May, 2020
164
August, 2021
162
June, 2019
151
February, 2021
120
July, 2018
115
May, 2019
82
November, 2017
80
April, 2019
61
July, 2019
51
October, 2018
48
December, 2017
47
September, 2023
40
May, 2024
38
May, 2021
33
March, 2020
25
November, 2018
23
February, 2020
22
May, 2022
20
November, 2019
19
April, 2020
15
October, 2017
9
February, 2023
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
4
November, 2020
3
December, 2019
3
May, 2023
1
August, 2022
1
March, 2019
Available data
1398
bam
1308
bigWig
765
bed narrowPeak
676
tsv
550
bigBed narrowPeak
301
fastq
230
tagAlign
208
bed broadPeak
199
bed bed3+
174
bigBed broadPeak
151
txt
23
bed bedMethyl
23
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
1
bedpe
1
tagAlign bed3+
Organism
2000
Homo sapiens
Biosample type
2008
tissue
647
primary cell
624
cell line
309
in vitro differentiated cells
10
stem cell
Organ
541
connective tissue
adipose tissue
417
pancreas
340
liver
274
heart
261
brain
224
kidney
146
bone element
114
limb
95
blood vessel
95
vasculature
81
musculature of body
42
nerve
36
artery
28
eye
24
spleen
20
lung
18
ureter
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
1942
AMP
47
KPMP
19
LungMap
T1D
Genome assembly (visualization)
1280
GRCh38
1213
hg19
Lab
1808
AMP-T2D consortium
67
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
Kyle Gaulton, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
Audit category:
90
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
14
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
ATAC-seq
award.project!
T1D
lab.title!
Kyle Gaulton, UCSD
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
2008 results
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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
DNase-seq
RNA microarray
pCHi-C
WGBS
snATAC-seq
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
69
279
6
1
4
1
3
1
1
4
liver
145
167
1
2
1
3
1
1
1
kidney
27
49
64
13
6
1
1
1
bone element
84
heart left ventricle
35
3
18
3
1
4
1
1
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