Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ATAC-seq
9
total RNA-seq
6
MeRIP-seq
6
pCHi-C
5
ChIP-seq
5
STARR-seq
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
whole genome sequencing assay
Assay category
9
Transcription
5
DNA binding
4
3D chromatin structure
1
DNA sequencing
Target of assay
7
control
3
nucleotide modification
1
transcription factor
Date released
22
August, 2021
6
February, 2023
6
November, 2020
4
March, 2020
1
December, 2018
1
February, 2021
1
May, 2020
1
November, 2017
1
November, 2019
1
October, 2019
1
October, 2022
Available data
bam
519
bigWig
427
fastq
bed narrowPeak
355
bigBed narrowPeak
118
tsv
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
43
Homo sapiens
Biosample type
612
tissue
333
primary cell
78
in vitro differentiated cells
45
cell line
5
stem cell
Organ
21
liver
11
pancreas
10
epithelium
4
kidney
1
mammary gland
Project
40
AMP
5
T1D
community
Genome assembly (visualization)
4
hg19
1
GRCh38
Lab
20
Bing Ren, UCSD
14
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
5
Kyle Gaulton, UCSD
Audit category:
12
inconsistent ontology term
Audit category:
1
inconsistent assembly
assay_title!
ATAC-seq
award.project!
community
files.file_type!
bam
bed narrowPeak
BIOSAMPLE
ASSAY
45 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
MeRIP-seq
pCHi-C
ChIP-seq
STARR-seq
Hi-C
CRISPR genome editing followed by DNA sequencing
Capture-C
HiChIP
CRISPR genome editing followed by sgRNA sequencing
MPRA
whole genome sequencing assay
cell line
HepG2
9
2
5
2
2
1
EndoC_BH1
6
1
3
2
2
1
HEK293T
2
MCF-7
1
MIN6
1
+ See 5 more…
See all biosamples
Download