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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 256total RNA-seq
  • 152single cell RNA-seq
  • ATAC-seq
  • 106ChIP-seq
  • 83snATAC-seq
  • 47WGBS
  • 17pCHi-C
  • 8Hi-C
  • 5STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 2Capture-C
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPRi RNA-seq
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 412Transcription
  • 106DNA binding
  • 83DNA accessibility
  • 47DNA methylation
  • 83D chromatin structure
  • 1DNA sequencing
Target of assay
  • 91histone
  • 91histone modification
  • 46narrow histone mark
  • 45broad histone mark
  • 11transcription factor
  • 4control
  • 1RNA binding protein
Date released
  • 153May, 2021
  • 102August, 2021
  • 95May, 2022
  • 88February, 2023
  • 56September, 2020
  • 47September, 2023
  • 45February, 2021
  • 45May, 2020
  • 19April, 2020
  • 16January, 2021
  • 7March, 2020
  • 5March, 2023
  • 3May, 2023
  • 3October, 2022
  • 1July, 2025
  • 1March, 2019
Available data
  • 200bigWig
  • 186bam
  • 159fastq
  • 115tsv
  • 114zippedFastqFolder
  • 102bed narrowPeak
  • 84tagAlign
  • 57txt
  • 7hic
  • 5bedpe bed3+
  • 3bed bed3+
  • 3cool
  • 1bedpe
  • 1tbi
  • 1vcf
Organism
  • 680Homo sapiens
Biosample type
  • 480primary cell
  • 157tissue
  • 45cell line
  • 2in vitro differentiated cells
  • 2stem cell
Organ
  • 129pancreas
  • 116kidney
  • 107epithelium
  • 31liver
  • 19lung
  • 8blood
  • 8bodily fluid
  • 3connective tissue
  • 1bone element
  • 1bone marrow
  • 1musculature of body
  • 1thymus
Project
  • 275HPAP
  • 233T1D
  • 107AMP
  • 47KPMP
  • 19LungMap
  • 4community
  • 1ITG
Genome assembly (visualization)
  • 208hg19
  • 188GRCh38
Lab
  • 275Klaus Kaestner, Upenn
  • 225Kyle Gaulton, UCSD
  • 67Katalin Susztak, Upenn
  • 47KPMP
  • 37Bing Ren, UCSD
  • 19Xin Sun, UCSD
  • 8AMP-T2D consortium
  • 4Anna Gloyn, Oxford
  • 2Struan F.A. Grant, CHOP
  • 1ITG
  • 1Stephen Parker, UMich
Audit category:
  • 30audit script error
  • 10inconsistent ontology term
assay_title!
  • ATAC-seq
award.rfa!
  • AMP
BIOSAMPLE
ASSAY

686 results

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Clear Filters
total RNA-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
STARR-seq
CRISPR genome editing followed by DNA sequencing
Capture-C
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
primary cell
monocyte53841
Langerhans cell8548
pancreatic alpha cell42311
exocrine cell39
pancreatic beta cell11161
tissue
kidney495861
lung910
islet of Langerhans8262
pancreas4
skeletal muscle tissue1
cell line
HepG2918121
EndoC_BH12232
EndoC-BH111
HEK293T2
Synthesized DNA1
in vitro differentiated cells
adipocyte1
osteoblast1
stem cell
SB Ad3.111
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