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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1765ChIP-seq
  • 1271total RNA-seq
  • ATAC-seq
  • 217single cell RNA-seq
  • 212DNase-seq
  • 87RNA microarray
  • 40pCHi-C
  • 28WGBS
  • 26Hi-C
  • 21RRBS
  • 18small RNA-seq
  • 10MeRIP-seq
  • 5FAIRE-seq
  • 5GRO-seq
  • 3snDrop-seq
  • 2Capture-C
  • 2snATAC-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1DNAme array
  • 1MPRA
Assay category
  • 1765DNA binding
  • 1506Transcription
  • 219DNA accessibility
  • 50DNA methylation
  • 263D chromatin structure
Target of assay
  • 926histone modification
  • 925histone
  • 503transcription factor
  • 468narrow histone mark
  • 456broad histone mark
  • 339control
  • 113RNA binding protein
  • 89recombinant protein
  • 36chromatin remodeller
  • 5nucleotide modification
  • 5other context
  • 5other post-translational modification
Date released
  • 648February, 2021
  • 406August, 2017
  • 406November, 2017
  • 292October, 2019
  • 218June, 2019
  • 212May, 2021
  • 196May, 2020
  • 168July, 2018
  • 141August, 2021
  • 120May, 2019
  • 102July, 2019
  • 94December, 2017
  • 88November, 2018
  • 80April, 2019
  • 76October, 2018
  • 59September, 2018
  • 53March, 2020
  • 49April, 2018
  • 40May, 2024
  • 39February, 2018
  • 35December, 2018
  • 35November, 2019
  • 30January, 2019
  • 28May, 2022
  • 25February, 2020
  • 15November, 2020
  • 15October, 2017
  • 14February, 2023
  • 10December, 2019
  • 6September, 2017
  • 5January, 2018
  • 4August, 2018
  • 3June, 2018
  • 1August, 2022
  • 1May, 2023
  • 1October, 2022
Available data
  • 3031bam
  • 2833bigWig
  • 1472tsv
  • 1437bed narrowPeak
  • 1138fastq
  • 1015bigBed narrowPeak
  • 320bed broadPeak
  • 314tagAlign
  • 285bigBed broadPeak
  • 267bed bed3+
  • 101txt
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 18bedpe bed3+
  • 16hic
  • 8csv
  • 5hdf5
  • 4tar
  • 2ibed
  • 1tagAlign bed3+
Organism
  • 3705Homo sapiens
Biosample type
  • 2361tissue
  • 588cell line
  • 408primary cell
  • 350in vitro differentiated cells
  • 8stem cell
Organ
  • 737liver
  • 665pancreas
  • 656connective tissue
  • 485adipose tissue
  • 346heart
  • 314epithelium
  • 282brain
  • 190vasculature
  • 184blood vessel
  • 163kidney
  • 146bone element
  • 114limb
  • 96artery
  • 95musculature of body
  • 60blood
  • 60bodily fluid
  • 42nerve
  • 37embryo
  • 33eye
  • 24spleen
  • 22vein
  • 18ureter
  • 5gonad
  • 5ovary
  • 4skeleton
  • 2intestine
  • 2pericardium
  • 1adrenal gland
  • 1esophagus
  • 1large intestine
  • 1lung
  • 1lymph node
  • 1mammary gland
  • 1pituitary gland
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1thymus
  • 1urinary bladder
Project
  • 3715AMP
Genome assembly (visualization)
  • 2744hg19
  • 2706GRCh38
  • 5hg18
Lab
  • 3561AMP-T2D consortium
  • 84Kyle Gaulton, UCSD
  • 40Patrick T. Ellinor, Broad
  • 20Karen Mohlke, UNC
  • 10Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
  • 301inconsistent ontology term
  • 28inconsistent control
  • 12audit script error
Audit category:
  • 89missing controlled_by
Audit category:
  • 56inconsistent control read length
  • 9inconsistent control run_type
  • 4inconsistent assembly
assay_title!
  • ATAC-seq
BIOSAMPLE
ASSAY

3715 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
DNase-seq
RNA microarray
pCHi-C
WGBS
Hi-C
RRBS
small RNA-seq
MeRIP-seq
FAIRE-seq
GRO-seq
snDrop-seq
Capture-C
snATAC-seq
CRISPR genome editing followed by sgRNA sequencing
DNAme array
MPRA
tissue
adipose tissue238213
islet of Langerhans6928461411411
liver1451671213111
bone element84
heart left ventricle3531831411
cell line
HepG23605211
GM1287860
smooth muscle cell of the coronary artery652
EndoC_BH113311621
Panc11311
primary cell
CD8-positive, alpha-beta T cell332
pancreatic alpha cell131012
pancreatic beta cell131012
pancreatic ductal cell13410
pancreatic acinar cell8412
in vitro differentiated cells
adipocyte6751
cardiomyocytes359
embryonic stem cell4071
neural progenitor cell217
pancreatic endoderm1841
stem cell
hESC31
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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