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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ATAC-seq
59
total RNA-seq
18
ChIP-seq
11
single cell RNA-seq
6
snATAC-seq
5
STARR-seq
4
Hi-C
2
Capture-C
1
whole genome sequencing assay
Assay category
70
Transcription
18
DNA binding
6
DNA accessibility
4
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
102
August, 2021
3
May, 2023
1
March, 2019
Available data
57
txt
14
bed narrowPeak
14
bigWig
10
tsv
3
hic
2
bed bed3+
2
bedpe bed3+
1
bedpe
1
vcf
Organism
106
Homo sapiens
Biosample type
70
tissue
34
cell line
2
in vitro differentiated cells
Organ
69
kidney
31
liver
3
pancreas
2
connective tissue
Project
106
AMP
Genome assembly (visualization)
19
hg19
Lab
67
Katalin Susztak, Upenn
37
Bing Ren, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
106 results
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Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
STARR-seq
Hi-C
Capture-C
whole genome sequencing assay
tissue
kidney
49
11
6
1
islet of Langerhans
1
2
cell line
HepG2
9
18
2
1
1
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
adipocyte
1
osteoblast
1
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