Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
ATAC-seq
57
total RNA-seq
21
ChIP-seq
6
snATAC-seq
2
Capture-C
2
Hi-C
1
RNA microarray
Assay category
163
Transcription
21
DNA binding
6
DNA accessibility
2
3D chromatin structure
Target of assay
14
histone
14
histone modification
7
broad histone mark
7
control
7
narrow histone mark
Date released
559
February, 2021
350
August, 2017
230
October, 2019
195
August, 2021
193
May, 2020
167
May, 2021
163
June, 2019
120
July, 2018
115
May, 2019
94
December, 2017
82
November, 2017
80
April, 2019
74
October, 2018
71
July, 2019
49
March, 2020
47
September, 2023
40
May, 2024
39
February, 2018
28
May, 2022
26
November, 2018
25
February, 2020
20
February, 2023
20
November, 2019
19
April, 2020
15
October, 2017
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
December, 2019
5
January, 2018
4
May, 2023
4
November, 2020
2
March, 2023
1
August, 2018
1
August, 2022
1
March, 2019
Available data
106
tsv
57
txt
27
bam
20
bigWig
20
tagAlign
13
bed narrowPeak
2
bed bed3+
1
bedpe bed3+
1
hic
Organism
194
Homo sapiens
Biosample type
165
tissue
cell line
30
in vitro differentiated cells
primary cell
Organ
92
heart
64
kidney
6
blood vessel
6
vasculature
3
connective tissue
2
artery
2
pancreas
1
adipose tissue
Project
195
AMP
Genome assembly (visualization)
22
hg19
20
GRCh38
Lab
127
AMP-T2D consortium
64
Katalin Susztak, Upenn
2
Bing Ren, UCSD
2
Struan F.A. Grant, CHOP
assay_title!
ATAC-seq
biosample_type!
cell line
primary cell
organ_slims!
stomach
BIOSAMPLE
ASSAY
195 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
Capture-C
Hi-C
RNA microarray
tissue
kidney
8
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 11 more…
in vitro differentiated cells
neural progenitor cell
7
21
adipocyte
1
osteoblast
1
See all biosamples
Download